Package org.simulator.examples

Class BiomodelsExample

java.lang.Object

org.simulator.examples.BiomodelsExample

public class BiomodelsExample
extends Object

This class can test the simulation of all models from BioModels database.

Version:

$Rev$

Author:

Roland Keller

Constructor Summary

Constructors

Constructor	Description
BiomodelsExample()

Method Summary

Modifier and Type	Method	Description
static void	main(String[] args)	* Input: directory with models (containing the biomodels), first model to be simulated, last model to be simulated,
static void	testBiomodels(String file, int from, int to)	Tests the models of biomodels.org using the RosenbrockSolver as integrator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BiomodelsExample

public BiomodelsExample()

Method Detail

testBiomodels

public static void testBiomodels(String file,
                                 int from,
                                 int to)
                          throws FileNotFoundException,
                                 IOException

Tests the models of biomodels.org using the RosenbrockSolver as integrator

Parameters:

file -

from -

to -

Throws:

FileNotFoundException

IOException

main

public static void main(String[] args)
                 throws IOException,
                        URISyntaxException

* Input:

1. directory with models (containing the biomodels),
2. first model to be simulated,
3. last model to be simulated,

Parameters:

args -

Throws:

IOException

URISyntaxException