Package | Description |
---|---|
org.simulator.math.odes |
The various solver classes that are all derived from
AbstractDESSolver . |
org.simulator.sbml |
Classes for storing and interpreting an
SBML
model.
|
Modifier and Type | Class | Description |
---|---|---|
class |
AbstractDESSolver |
This Class represents an abstract solver for event-driven DES
|
class |
AdamsBashforthSolver |
This class is a wrapper for the Adams-Bashforth solver in the
Apache Math Library.
|
class |
AdamsMoultonSolver |
This class is a wrapper for the Adams-Moulton solver in the
Apache Math Library.
|
class |
AdaptiveStepsizeIntegrator |
This is an abstract class for solvers with adaptive stepsizes and given
relative and absolute tolerances.
|
class |
DormandPrince54Solver |
This class is a wrapper for the Dormand-Prince-54 solver in the
Apache Math Library.
|
class |
DormandPrince853Solver |
This class is a wrapper for the Dormand-Prince-853 solver in the
Apache Math Library.
|
class |
EulerMethod |
In this class the Euler method for integration a differential equation system
is implemented.
|
class |
FirstOrderSolver |
This class is the superclass of the wrapper classes for the solvers of the
Apache Math Library.
|
class |
GraggBulirschStoerSolver |
This class is a wrapper for the Gragg-Bulirsch-Stoer solver in the
Apache Math Library.
|
class |
HighamHall54Solver |
This class is a wrapper for the Higham-Hall-54 solver in the
Apache Math Library.
|
class |
RosenbrockSolver |
An implementation of Rosenbrock's method to approximate ODE
solutions.
|
class |
RungeKutta_EventSolver |
Runge-Kutta method.
|
Modifier and Type | Method | Description |
---|---|---|
void |
DelayedDESystem.registerDelayValueHolder(DelayValueHolder dvh) |
Modifier and Type | Interface | Description |
---|---|---|
interface |
SBMLValueHolder |
A
SBMLValueHolder is necessary to provide the current values for
Compartment s, Species , Parameter s, and
SpeciesReference s at simulation time. |
Modifier and Type | Class | Description |
---|---|---|
class |
SBMLinterpreter |
This differential equation system (
DESystem ) takes a model in
SBML
format and maps it to a data structure that is understood by the
AbstractDESSolver . |
Modifier and Type | Method | Description |
---|---|---|
void |
SBMLinterpreter.registerDelayValueHolder(DelayValueHolder dvh) |
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