Package org.simulator.sbml.astnode

Class RateRuleValue

java.lang.Object

org.simulator.sbml.astnode.RuleValue

org.simulator.sbml.astnode.RateRuleValue

public class RateRuleValue
extends RuleValue

This class can compute and store the value of a rate rule together with the variable of the rule.

Version:

$Rev$

Author:

Roland Keller

Field Summary

Fields inherited from class org.simulator.sbml.astnode.RuleValue

compartmentIndex, hasOnlySubstanceUnits, hasZeroSpatialDimensions, index, isSetInitialAmount, isSetInitialConcentration, isSpecies, nodeObject, value, valueHolder

Constructor Summary

Constructors

Constructor	Description
RateRuleValue(ASTNodeValue nodeObject, int index)
RateRuleValue(ASTNodeValue nodeObject, int index, List<Integer> speciesIndices, SBMLValueHolder valueHolder)	Constructor for a rule with a compartment as variable
RateRuleValue(ASTNodeValue nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder)	Constructor for a rule with a species as variable

Method Summary

Modifier and Type	Method	Description
void	processRule(double[] changeRate, double[] Y, double time)	Processes the rule and saves the new value of the corresponding variable in the changeRate vector.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from class org.simulator.sbml.astnode.RuleValue

getIndex, getValue, processAssignmentVariable

Constructor Detail

RateRuleValue

public RateRuleValue(ASTNodeValue nodeObject,
                     int index)

Parameters:

nodeObject -

index -

RateRuleValue

public RateRuleValue(ASTNodeValue nodeObject,
                     int index,
                     org.sbml.jsbml.Species sp,
                     int compartmentIndex,
                     boolean hasZeroSpatialDimensions,
                     SBMLValueHolder valueHolder)

Constructor for a rule with a species as variable

Parameters:

nodeObject -

index -

sp -

compartmentIndex -

hasZeroSpatialDimensions -

valueHolder -

RateRuleValue

public RateRuleValue(ASTNodeValue nodeObject,
                     int index,
                     List<Integer> speciesIndices,
                     SBMLValueHolder valueHolder)

Constructor for a rule with a compartment as variable

Parameters:

nodeObject -

index -

speciesIndices -

valueHolder -

Method Detail

processRule

public void processRule(double[] changeRate,
                        double[] Y,
                        double time)

Processes the rule and saves the new value of the corresponding variable in the changeRate vector.

Parameters:

changeRate -

Y -

time -