Package org.simulator.sedml

Classes for reading and executing SED-ML files. The jlibsedml library is used to perform these operations.

For more information about SED-ML please visit http://sed-ml.org.

Classes for storing and interpreting an SBML model. The most important class is SBMLinterpreter that can return the current vector of derivatives to the solver.

Version:

$Rev$

Author:

Richard Adams

Class Summary

Class	Description
FileModelResolver	This resolver will resolve relative URIs with no scheme, i.e., relative URIs to files. For example: "Myfile.xml" a/b/c/d.xml URIs specified with the 'file' schema will not be resolved unless the path is absolute.
MultTableSEDMLWrapper	This class adapts the native results to an interface that the SED-ML processor can use to post-process results.
ProcessSedMLResults	Processes raw simulation results according to instructions specified in the DataGenerator elements specified in the output.
SedMLSBMLSimulatorExecutor	This class extends an abstract class from jlibsedml, which provides various support functions such as retrieving models, applying changes to models, working out what tasks need to be executed to achieve an Output, and post-processing of results.
SEDMLWriter	Writes a simulation configuration to SED-ML for export and sharing. Usage:

Exception Summary

Exception	Description
ExecutionException	Runtime exception indicating that SED-ML execution has failed.