Package | Description |
---|---|
org.simulator.math.odes |
The various solver classes that are all derived from
AbstractDESSolver . |
org.simulator.sedml |
Classes for reading and executing
SED-ML files.
|
Modifier and Type | Class | Description |
---|---|---|
class |
AdamsBashforthSolver |
This class is a wrapper for the Adams-Bashforth solver in the
Apache Math Library.
|
class |
AdamsMoultonSolver |
This class is a wrapper for the Adams-Moulton solver in the
Apache Math Library.
|
class |
AdaptiveStepsizeIntegrator |
This is an abstract class for solvers with adaptive stepsizes and given
relative and absolute tolerances.
|
class |
DormandPrince54Solver |
This class is a wrapper for the Dormand-Prince-54 solver in the
Apache Math Library.
|
class |
DormandPrince853Solver |
This class is a wrapper for the Dormand-Prince-853 solver in the
Apache Math Library.
|
class |
EulerMethod |
In this class the Euler method for integration a differential equation system
is implemented.
|
class |
FirstOrderSolver |
This class is the superclass of the wrapper classes for the solvers of the
Apache Math Library.
|
class |
GraggBulirschStoerSolver |
This class is a wrapper for the Gragg-Bulirsch-Stoer solver in the
Apache Math Library.
|
class |
HighamHall54Solver |
This class is a wrapper for the Higham-Hall-54 solver in the
Apache Math Library.
|
class |
RosenbrockSolver |
An implementation of Rosenbrock's method to approximate ODE
solutions.
|
class |
RungeKutta_EventSolver |
Runge-Kutta method.
|
Modifier and Type | Field | Description |
---|---|---|
protected AbstractDESSolver |
AbstractDESSolver.clonedSolver |
A cloned version of this object
|
Modifier and Type | Method | Description |
---|---|---|
abstract AbstractDESSolver |
AbstractDESSolver.clone() |
Constructor | Description |
---|---|
AbstractDESSolver(AbstractDESSolver solver) |
Clone constructor.
|
Modifier and Type | Method | Description |
---|---|---|
void |
SEDMLWriter.saveExperimentToSEDML(double start,
double end,
double stepsize,
AbstractDESSolver solver,
org.sbml.jsbml.Model model,
URI modelURI,
OutputStream os) |
Given a configured simulation, will write to SED-ML using the specified
OutputStream . |
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