Uses of Class org.simulator.sbml.astnode.ASTNodeValue (Systems Biology Simulation Core Library (SBSCL) 1.5 API)

Packages that use ASTNodeValue
Package	Description
org.simulator.sbml	Classes for storing and interpreting an SBML model.
org.simulator.sbml.astnode	Classes for efficient numerical treatment of equations in form of abstract syntax trees.

Uses of ASTNodeValue in org.simulator.sbml

Fields in org.simulator.sbml declared as ASTNodeValue
Modifier and Type	Field	Description
`protected ASTNodeValue`	SBMLEventInProgress.`delayObject`	The delay math of the event
`protected ASTNodeValue`	SBMLEventInProgress.`priorityObject`	The priority math of the event
`protected ASTNodeValue`	SBMLEventInProgress.`triggerObject`	The trigger of the event

Methods in org.simulator.sbml that return ASTNodeValue
Modifier and Type	Method	Description
`ASTNodeValue`	SBMLEventInProgress.`getDelayObject()`
`ASTNodeValue`	SBMLEventInProgress.`getPriorityObject()`
`ASTNodeValue`	SBMLEventInProgress.`getTriggerObject()`

Methods in org.simulator.sbml with parameters of type ASTNodeValue
Modifier and Type	Method	Description
`void`	SBMLEventInProgress.`setDelayObject(ASTNodeValue delayObject)`	Sets the math of the delay to a specific ASTNodeObject.
`void`	SBMLEventInProgress.`setPriorityObject(ASTNodeValue priorityObject)`	Sets the math of the priority to a specific ASTNodeObject.
`void`	SBMLEventInProgress.`setTriggerObject(ASTNodeValue triggerObject)`	Sets the math of the trigger to a specific ASTNodeObject.

Uses of ASTNodeValue in org.simulator.sbml.astnode

Subclasses of ASTNodeValue in org.simulator.sbml.astnode
Modifier and Type	Class	Description
`class`	`CompartmentOrParameterValue`	This class computes and stores values of `ASTNode`s that refer to a `Compartment` or a `Parameter`.
`class`	`DivideValue`	This class computes and stores values of `ASTNode`s that refer to a division object.
`class`	`FunctionValue`	This class computes and stores values of `ASTNode`s that refer to the application of a `FunctionDefinition`.
`class`	`IntegerValue`	This class can compute and store the value of an integer node.
`class`	`LocalParameterValue`	This class computes and stores values of `ASTNode`s that refer to a `LocalParameter`.
`class`	`MinusValue`	This class can compute and store the value of a minus node.
`class`	`NamedValue`	This class computes and stores values of variables occurring in a function.
`class`	`PlusValue`	This class can compute and store the value of a plus node.
`class`	`PowerValue`	This class can compute and store the value of a power expression.
`class`	`ReactionValue`	This class computes and stores values of `ASTNode`s that refer to a `Reaction`.
`class`	`RootFunctionValue`	This class computes and stores values of `ASTNode`s that refer to a root function.
`class`	`SpeciesReferenceValue`	This class computes and stores values of `ASTNode`s that refer to a `SpeciesReference`.
`class`	`SpeciesValue`	This class computes and stores values of `ASTNode`s that refer to a `Species`.
`class`	`TimesValue`	This class can compute and store the value of times nodes.

Fields in org.simulator.sbml.astnode declared as ASTNodeValue
Modifier and Type	Field	Description
`protected ASTNodeValue[]`	ASTNodeValue.`children`	The ASTNodeObjects of the child nodes of the corresponding ASTNode
`protected ASTNodeValue`	FunctionValue.`evaluationBlock`	The value of the evaluation block of the function stored in an ASTNodeObject.
`protected ASTNodeValue`	ReactionValue.`kineticLawUserObject`	The object hat refers to the kinetic law of the reaction
`protected ASTNodeValue`	ASTNodeValue.`leftChild`	The ASTNodeObject of the left child of the corresponding ASTNode
`protected ASTNodeValue`	RuleValue.`nodeObject`	Object that refers to the math of the rule
`protected ASTNodeValue`	ASTNodeValue.`rightChild`	The ASTNodeObject of the right child of the corresponding ASTNode

Methods in org.simulator.sbml.astnode with parameters of type ASTNodeValue
Modifier and Type	Method	Description
`double`	ASTNodeInterpreter.`abs(ASTNodeValue userObject, double time, double delay)`
`boolean`	ASTNodeInterpreter.`and(ASTNodeValue[] children, int size, double time)`
`double`	ASTNodeInterpreter.`arccos(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arccosh(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arccot(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arccoth(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arccsc(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arccsch(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arcsec(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arcsech(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arcsin(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arcsinh(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arctan(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`arctanh(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`ceiling(ASTNodeValue userObject, double time, double delay)`
`String`	ASTNodeInterpreter.`compileString(ASTNodeValue child)`
`double`	ASTNodeInterpreter.`cos(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`cosh(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`cot(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`coth(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`csc(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`csch(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`delay(ASTNodeValue x, ASTNodeValue delay, String timeUnits, double time)`
`boolean`	ASTNodeInterpreter.`eq(ASTNodeValue left, ASTNodeValue right, double time)`
`double`	ASTNodeInterpreter.`exp(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`factorial(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`floor(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`frac(ASTNodeValue left, ASTNodeValue right, double time, double delay)`
`boolean`	ASTNodeInterpreter.`functionBoolean(ASTNodeValue rightChild, List<String> variables, ASTNodeValue[] children, double[] values, double time)`
`double`	ASTNodeInterpreter.`functionDouble(ASTNodeValue rightChild, List<String> variables, ASTNodeValue[] children, int nArguments, double[] values, double time)`
`boolean`	ASTNodeInterpreter.`geq(ASTNodeValue left, ASTNodeValue right, double time)`
`boolean`	ASTNodeInterpreter.`gt(ASTNodeValue left, ASTNodeValue right, double time)`
`boolean`	ASTNodeInterpreter.`lambdaBoolean(ASTNodeValue[] children, double time)`
`double`	ASTNodeInterpreter.`lambdaDouble(ASTNodeValue[] children, double time)`
`boolean`	ASTNodeInterpreter.`leq(ASTNodeValue left, ASTNodeValue right, double time)`
`double`	ASTNodeInterpreter.`ln(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`log(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`log(ASTNodeValue left, ASTNodeValue right, double time, double delay)`
`boolean`	ASTNodeInterpreter.`lt(ASTNodeValue left, ASTNodeValue right, double time)`
`double`	ASTNodeInterpreter.`minus(ASTNodeValue[] children, int size, double time, double delay)`
`boolean`	ASTNodeInterpreter.`neq(ASTNodeValue left, ASTNodeValue right, double time)`
`boolean`	ASTNodeInterpreter.`not(ASTNodeValue node, double time)`
`boolean`	ASTNodeInterpreter.`or(ASTNodeValue[] children, double time)`
`double`	ASTNodeInterpreter.`piecewise(ASTNodeValue[] children, double time, double delay)`
`double`	ASTNodeInterpreter.`plus(ASTNodeValue[] children, int size, double time, double delay)`
`double`	ASTNodeInterpreter.`pow(ASTNodeValue left, ASTNodeValue right, double time, double delay)`
`double`	ASTNodeInterpreter.`root(double rootExponent, ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`root(ASTNodeValue rootExponent, ASTNodeValue radiant, double time, double delay)`
`double`	ASTNodeInterpreter.`sec(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`sech(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`sin(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`sinh(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`sqrt(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`tan(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`tanh(ASTNodeValue userObject, double time, double delay)`
`double`	ASTNodeInterpreter.`times(ASTNodeValue[] children, int size, double time, double delay)`
`double`	ASTNodeInterpreter.`uMinus(ASTNodeValue userObject, double time, double delay)`
`boolean`	ASTNodeInterpreter.`xor(ASTNodeValue[] children, double time)`

Method parameters in org.simulator.sbml.astnode with type arguments of type ASTNodeValue
Modifier and Type	Method	Description
`boolean`	ASTNodeInterpreter.`functionBoolean(String name, List<ASTNodeValue> children)`
`double`	ASTNodeInterpreter.`functionDouble(String functionDefinitionName, List<ASTNodeValue> args, double time)`

Constructors in org.simulator.sbml.astnode with parameters of type ASTNodeValue
Constructor	Description
`AssignmentRuleValue(ASTNodeValue nodeObject, int index)`
`AssignmentRuleValue(ASTNodeValue nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder)`	Constructor for rules that refer to a species
`AssignmentRuleValue(ASTNodeValue nodeObject, String speciesReferenceID, Map<String,Double> stoichiometricCoefHash)`	Constructor for rules that refer to a species reference
`RateRuleValue(ASTNodeValue nodeObject, int index)`
`RateRuleValue(ASTNodeValue nodeObject, int index, List<Integer> speciesIndices, SBMLValueHolder valueHolder)`	Constructor for a rule with a compartment as variable
`RateRuleValue(ASTNodeValue nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder)`	Constructor for a rule with a species as variable
`RuleValue(ASTNodeValue nodeObject, int index)`
`RuleValue(ASTNodeValue nodeObject, int index, org.sbml.jsbml.Species sp, int compartmentIndex, boolean hasZeroSpatialDimensions, SBMLValueHolder valueHolder)`	Constructor for rules that refer to a species.
`StoichiometryValue(org.sbml.jsbml.SpeciesReference sr, int speciesRefIndex, Map<String,Double> stoichiometricCoefHash, double[] Y, ASTNodeValue stoichiometryMathValue)`

Uses of Classorg.simulator.sbml.astnode.ASTNodeValue

Uses of ASTNodeValue in org.simulator.sbml

Uses of ASTNodeValue in org.simulator.sbml.astnode

Uses of Class
org.simulator.sbml.astnode.ASTNodeValue